New record of Tulostoma squamosum (Agaricales: Basidiomycota) from India based on morphological features and phylogenetic analysis

Main Article Content

Arun Kumar Dutta
https://orcid.org/0000-0001-5234-3441
Soumitra Paloi
https://orcid.org/0000-0003-3980-9168
Krishnendu Acharya

Abstract

Tulostoma squamosum is reported for the first time from India.  A comprehensive macro-morphological description, field photographs along with microscopic observations, and comparisons with morphologically similar and phylogenetically related taxa are provided.  Nucleotide sequence comparison and an estimation of evolutionary divergence between Tulostoma squamosum sequences across different geographic origin are also provided.

Article Details

How to Cite
[1]
Dutta, A.K., Paloi, S. and Acharya, K. 2020. New record of Tulostoma squamosum (Agaricales: Basidiomycota) from India based on morphological features and phylogenetic analysis. Journal of Threatened Taxa. 12, 3 (Feb. 2020), 15375–15381. DOI:https://doi.org/10.11609/jott.5663.12.3.15375-15381.
Section
Short Communications
Author Biography

Arun Kumar Dutta, Department of Botany, West Bengal State University, North-24-Parganas, Barasat, West Bengal 700126, India.

DST-Inspire Faculty
Department of Botany
West Bengal State University
Berunanpukuria, Malikapur,
Barasat, 24-Parganas (N)
PIN- 700126

References

Darriba, D., G.L. Taboada, R. Doallo & D. Posada (2012). “jModelTest 2: more models, new heuristics and parallel computingâ€. Nat Methods 9(8): 772.

Dutta, A.K., V. Antonín, R. Barui & K. Acharya (2018). A new species of Clitocybula (Marasmiaceae) from West Bengal, India. Nova Hedwigia 107(1–2): 195–203.

Edgar, R. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32(5): 1792–1797.

Esqueda, M., G. Moreno, E. Perez-Silva & A.A. Sanchez (2004). The genus Tulostoma in Sonora, Mexico. Mycotaxon 90(2): 409–422.

Geyer, C.J. (1991). Markov chain Monte Carlo maximum likelihood. In: Keramidas EM (eds) Computing Science and Statistics: Proceedings of the 23rd Symposium on the Interface. Fairfax Station: Interface Foundation. 156–163.

Hussain, S., N. Yousaf, N.S. Afshan, A.R. Niazi, H. Ahmad & A.N. Khalid (2016). Tulostoma ahmadii sp. nov. and T. squamosum from Pakistan. Turkish Journal of Botany 40: 218–225.

Jeppson, M., A. Altés, G. Moreno, R.H. Nilsson, Y. Loarce, A. de Bustos & E. Larsson (2017). Unexpected high species diversity among European stalked puffballs - a contribution to the phylogeny and taxonomy of the genus Tulostoma (Agaricales). MycoKeys 21: 33–88.

Katoh, K. & D.M. Standley (2013). MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Molecular Biology and Evolution 30: 772–780.

Kimura, M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16: 111–120.

Kornerup, A. & J.H. Wanscher (1978). Methuen Handbook of Colour. 3rd Edition. Eyre Methuen Ltd. Reprint, UK.

Kumar, S., G. Stecher & K. Tamuera (2016). MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Molecular Biology and Evolution 33(7): 1870–1874.

Lima, A.A. & I.G. Baseia (2018). Tulostoma reticulatum (Agaricales, Basidiomycota), a rare stalked puffball reported from the Brazilian Atlantic rainforest. Studies in Fungi 3(1): 121–125.

Miller, M.A., W. Pfeiffer & T. Schwartz (2010). Creating the CIPRES Science Gateway for inference of large phylogenetic trees, pp. 1–8. Proceedings of the Gateway Computing Environments Workshop (GCE), New Orleans, LA. DOI: https://doi.org/10.1109/GCE.2010.5676129

Paloi, S., A.K. Dutta & K. Acharya (2015). A new species of Russula (Russulales) from eastern Himalaya, India. Phytotaxa 234(3): 255–262.

Persoon, C.H. (1801). Synopsis Methodica Fungorum. Gottingae, Germany.

Pouzar, Z. (1958). Tulostoma in PILAT. A. Flora CSR: Gasteromycetes, B: 589–613; 810–815. Prace Ceskoslovenské Akadeimie Ved. Praha.

Ronquist, F., M. Teslenko, P. van der Mark, D.L. Ayres, A. Darling, S. Höhna, B. Larget, L. Liu, M.A. Suchard & J.P. Huelsenbeck (2012). MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systems Biology 61(3): 539–42.

Sesli, E., J.E. Wright & I. Turkekul (2000). The Genus Tulostoma Pers.: Pers. (Gasteromycetes) in Turkey. Turkish Journal of Botany 24: 269–272.

Stamatakis, A. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22(21): 2688–2690.

State Forest Report (2011–2012). Government of West Bengal, Directorate of Forests, Kolkata. http://www.indiaenvironmentportal.org.in/content/394360/west-bengal-state-forest-report-2011-2012/ (Accessed 3 December 2019).

White, T.J., T. Bruns, S. Lee & J.W. Taylor (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, pp. 315–322. In: Innis, M.A., D.H. Gelfand, J.J. Shinsky & T.J. White (Ed.) PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego.

Wright, J.E. (1987). The genus Tulostoma (Gasteromycetes): a world monograph. Bibliotheca Mycologica 113: 1–338.