Journal of Threatened
Taxa | www.threatenedtaxa.org | 26 November 2024 | 16(11): 26116–26123
ISSN 0974-7907
(Online) | ISSN 0974-7893 (Print)
https://doi.org/10.11609/jott.9368.16.11.26116-26123
#9368 | Received 05
September 2024 | Final received 05 October 2024 | Finally accepted 31 October
2024
DNA barcoding and distribution of
Osteobrama peninsularis
(Teleostei: Cyprinidae) in
India
Boni Amin Laskar
1 ,
Asha Kiran Tudu 2, Shibananda
Rath 3 &
Laishram Kosygin 4
1 Zoological Survey of India, High
Altitude Regional Centre, Saproon, Solan, Himachal Pradesh 173211, India.
2,3,4 Zoological Survey of India,
Freshwater Fish Section, 27 JL Nehru Road, Kolkata, West Bengal 700016, India.
1 boniamin.laskar@gmail.com
(corresponding author), 2 kiran.asha31@gmail.com, 3 rathshibananda@gmail.com,4
lkzsi5@yahoo.com
Editor: Mandar Paingankar, Government Science College Gadchiroli,
Maharashtra, India. Date of publication: 26
November 2024 (online & print)
Citation: Laskar, B.A., A.K. Tudu, S. Rath & L. Kosygin (2024). DNA barcoding
and distribution of Osteobrama peninsularis (Teleostei: Cyprinidae) in India. Journal of Threatened Taxa 16(11):
26116–26123. https://doi.org/10.11609/jott.9368.16.11.26116-26123
Copyright: © Laskar et al. 2024. Creative Commons Attribution 4.0
International License. JoTT allows unrestricted use,
reproduction, and distribution of this article in any medium by providing
adequate credit to the author(s) and the source of publication.
Funding: The research is funded by the Core Funding of Zoological Survey of India (ZSI), Kolkata, Ministry of Environment, Forest and Climate Change (MoEF&CC), New Delhi.
Competing interests: The authors declare no competing interests.
Author details: Dr. Boni Amin Laskar is currently working as scientist-E in Zoological Survey of India. His field of research is molecular studies & taxonomy of freshwater fishes. He has over 23 years of research experience including field surveys throughout various Biogeographic zones in India, and published in several reputed journals. Asha Kiran Tudu is working as assistant zoologist in Zoological Survey of India. With over 15 years of experience in the field of freshwater fish taxonomy, she has described several new fish species and published in reputed journals. Shibananda Rath is currently working as scientist-C
in Zoological Survey of India. With over 25 years of experience including field surveys and taxonomic studies, especially from the Himalayan and northeast Indian region, he has published in several reputed journals. He has described several new fish species and new records from India. Dr. Laishram Kosygin Singh is currently working as scientist-E in Zoological Survey of India. His field of specialization is taxonomy of freshwater fish. With over 25 years of experience in taxonomic research, he has described over 40 new fish species from India and Myanmar, and documented systematic checklist of fishes of India.
Author contributions: BAL & AKT did field surveys and collected the specimens. BAL, AKT & SR studied the morphology and meristics of the specimens for taxonomic identification. BAL generated the DNA data, and did the molecular analysis. BAL, AKT, SR & LK wrote the article. BAL & LK reviewed the article.
Acknowledgements: We would like to express our
heartfelt gratitude to Dr. Dhriti
Banerjee, Director of the Zoological Survey of India, for graciously granting
us permission to undertake this important work.
Abstract: Osteobrama peninsularis has been reported in southern
Indian drainages, particularly in the Krishna River drainage. This study
provides new findings of O. peninsularis
in two distant locations: the Kangsabati River (Suvarnarekha River drainage) in West Bengal and Wyra Lake (Godavari River drainage) in Telangana. This
marks the first record of O. peninsularis
in eastern India, specifically in West Bengal. The species can be distinguished
from other Osteobrama members by its 28–31
branched anal-fin rays and 55–60 lateral line scales, along with other unique
morphological features. Mitochondrial cytochrome oxidase C subunit I gene
sequences from specimens collected in Suvarnarekha
and Godavari River drainages cluster together in the phylogenetic analysis,
indicating that the clade of O. peninsularis
is distinct and maintains significant genetic distance from its congeners.
Keywords: Carp, genetic analysis, minnow,
new record, peninsular India, range extension, ray-finned fish, taxonomy, West
Bengal.
introduction
The genus Osteobrama includes several key food fish species in
India, thriving in both lentic and lotic systems. The species in the genus Osteobrama (type species Cyprinus
cotio Hamilton, 1822) are characterized by their
laterally compressed bodies, elevated dorsum, absence of procumbent predorsal spines, rounded abdomens in front of the pelvic
fins, keeled abdominal edges from the pelvic-fin origin to the vent, and long
anal fins with more than 10 branched rays (Talwar & Jhingran
1991). Hamilton (1822) described the type species as having a row of “5–6 black
spots below the fore part of the lateral line, around which is a bluish shining
depression” (plate 207).
Sykes
described two species, Rohtee vigorsii and R. ogilbii,
from the Deccan region of India (Sykes 1838), categorizing them under the genus
Rohtee, which he characterized by long dorsal
and anal fins, a posteriorly serrated last undivided dorsal-fin ray, and minute
scales. Bleeker (1863) designated R. ogilbii
as the type species of the genus, a classification upheld in later taxonomic
work (Tilak & Husain 1989). The placement of species within the genera Osteobrama and Rohtee
has been addressed by Jordan (1919), Hora (1921), and Mukerji (1934). Hora
(1937) distinguished R. ogilbii from
species now classified as Osteobrama by its
unique procumbent predorsal spine and the long anal
fin with 13 to 14 branched rays, Consequently, Rohtee
is now recognized as valid with R. ogilbii
as its sole species, while Osteobrama currently
includes 10 valid species (Laskar et al. 2024).
Among the
10 valid species, the type species O. cotio
is widespread in the Ganga basin of India and Bangladesh (Rahman et al. 2018).
Three congeners, O. feae, O. cunma, and O. belangeri
are distributed in Myanmar and the Irrawaddy drainage in India and China
(Rahman et al. 2018). Doi (1997) reported O. alfredianus, O. belangeri,
and O. feae from the Salween basin, but
Laskar et al. (2024) questioned the validity of O.
alfredianus. Silas (1952) described O. peninsularis from peninsular India. Two more
species, O. neilli and O. bakeri are found in extreme southern peninsular
India (Talwar & Jhingran 1991; Jadhav et al.
2011; Rahman et al. 2018). Shangningam et al. (2020)
described O. tikarpadaensis from the
Mahanadi River in Odisha and recognized O. dayi
as a valid species. Laskar et al. (2024) states that O.
vigorsii is limited to the Krishna River
system in southern India, while the distribution of O. tikarpadaensis extends to the Godavari River
drainages of South India. Morphologically, O. peninsularis
closely resembles O. cotio, leading to
frequent misidentifications due to their narrow range of morphological
variations. The species is currently listed as Data Deficient on the IUCN Red
List, raising questions about its record from Kerala (Dahanukar
2011).
This study
suggests the extension of the distribution of O. peninsularis,
which was previously documented only in southern India, by identifying the
species from a new location in eastern India: Kangsabati
River in the state West Bengal. DNA barcoding of specimens from southern India
and eastern India further confirms the identification of O. peninsularis. These findings align with the original
description of the species, with minor variations, and is a first report of O.
peninsularis in eastern Indian drainage.
Materials and Methods
Morphometric
and meristic data were recorded following Jayaram (1999). Measurements were
taken on the left side of the specimens using digital calipers to the nearest
0.1 mm. Fin rays and scale counts were performed under transmitted light with a
stereomicroscope. All pored scales were counted for reporting the lateral line
scale. The count of transverse scale rows, between the lateral line and the
origin of the dorsal-fin, include the lateral line scale. Body subunits are
expressed as a percentage of standard length (SL), while head subunits are
presented as a percentage of head length (HL). The specimens have been
deposited at the Zoological Survey of India (ZSI), Kolkata, and at the
Freshwater Biology Regional Centre of the Zoological Survey of India, Hyderabad.
Genetic analysis. Tissue samples were obtained from freshly
collected specimens of O. peninsularis
and preserved in 90% ethanol. The genomic DNA was extracted through QIAamp DNA Mini Kit (Qiagen, Valencia, CA) following the
manufacturer’s protocol. The published primer pair (Ward et al. 2005):
FishF1-5′TCAACCAACCACAAAGACATTGGCAC3′ and FishR1-5′TAGACTTCTGGGTGGCCAAAGAATCA3′
was used to amplify the partial segment of mitochondrial cytochrome oxidase C
subunit I gene (COI). The 30 µl PCR mixture contains 10 pmol
of each primer, 100 ng of DNA template, 1 × PCR buffer, 1.0–1.5 mM of MgCl2, 0.25 mM of each
dNTPs, and 1U of Taq polymerase (Takara BIO Inc.,
Japan). The thermal profile was set to initial 2 min at 95 °C followed by 35
cycles of 0.5 min at 94 °C, 0.5 min at 54 °C, and 1 min at 72 °C, followed in
turn by 10 min at 72 °C and subsequent hold at 4°C. The PCR products were
further purified using QIAquickR Gel extraction Kit
(Qiagen, Valencia, CA).
The cycle
sequencing and Sanger sequencing was executed commercially. Both forward and
reverse chromatograms were checked through SeqScanner
V1.0 (Applied Biosystems Inc., CA, USA), nucleotide BLAST
(https://blast.ncbi.nlm.nih.gov/), and ORF finder
(https://www.ncbi.nlm.nih.gov/orffinder/) to trim the low-quality reads and
gaps. The DNA sequences generated as part of the current study have been
deposited in GenBank with accession No. MT896379 & PQ333057 for O. peninsularis; MZ854239 & MZ854240 for O. cotio. We retrieved all the available COI sequences
of Osteobrama species from GenBank
(https://www.ncbi.nlm.nih.gov/nucleotide/, assessed on 28 August 2023) and ran
a test of neighbor-joining phylogeny. Based on the cohesive clustering, a
maximum of five representative database sequences from each conspecific clade
were used in the refined analysis. Following Rahman et al. (2018),
uncertain sequences of O. cotio from
Narmada River basin as well as from Karnafuli and Sangu Rivers were not included in the dataset. Further, a
maximum of five representative sequences of three congeners used in Rahman et
al. (2018), O. belangeri, O. cunma, and O. feae
were used in the dataset. The dataset was aligned using ClustalX
(Thompson et al. 1997) and the Kimura 2 parameter (K2P) genetic distances were
estimated by using MEGAX (Kumar et al. 2018).
Results
Material
examined
Osteobrama peninsularis
Silas 1952 (Image 1, and Table 1 and 2): ZSI FF 9901, 1, 69.4 mm SL, Kangshabati (or Kansai) River, Paschim Medinipur
District, West Bengal, India (22.4060N & 87.3070E),
collected by S. Rath, 14 October 2022. Genbank accession for mtCOI
sequence: PQ333057; FBRC/ZSI/F3549, 1, 68.0 mm SL, Wyra
lake, Godavari River drainage, Khammam District, Telangana, India, collected by
Sudipta Mandal, 20 July 2020. Genbank
accession for mtCOI sequence: MT896379.
Description
Body deep,
laterally compressed. Dorsal profile sloping upward linearly to nape, then in a
broad curve to dorsal fin origin, forming a distinct hump, then sloping
gradually downward towards caudal peduncle. Ventral profile strongly curved
from tip of snout to origin of anal fin. Head compressed longer than deep. Eye
large situated anteriorly on head, visible from dorsal and ventral side. Mouth terminal, obliquely directed upwards. Barbels absent.
Dorsal fin
with iii unbranched and eight branched rays, last unbranched ray stiff and
serrated. Pectoral fin with i unbranched and 14
branched rays. Pelvic fin i unbranched and eight
branched rays. Anal fin long with iii unbranched rays and 29 branched rays.
Caudal fin deeply forked with 9+8 branched rays. Scales small in size.
Pre-dorsal scale 24. Lateral line complete with 58 scales.
Coloration
In
preserved specimens, dorsal and dorsolateral surfaces of head and body faint
brown, lateral surface of body greyish, become lighter ventrally. Dorsal,
pectoral, pelvic, anal and caudal fin is pale white. An oblique black streak
immediately posterior to opercle, parallel to upper opercular margin present.
Genetic
analysis
The mtCOI sequences (denovo)
of both the specimens of Osteobrama peninsularis in the study, cluster together. In the
phylogram (Figure 1), the denovo sequences of O.
peninsularis along with a few sequences
borrowed from GenBank (with taxa name O. cotio)
form a distinct clade. The sequences in the O. peninsularis
clade show 0.0 to 0.62 % pairwise genetic distance (intraspecies divergence)
and maintain 5.28 to 5.68% genetic distance (interspecies divergence) with the
sequences in the clade of O. cotio. The
clade of O. peninsularis corresponds
with one of the subclades of Clade A referred in Rahman et al. (2018).
Notwithstanding to having a considerable range of genetic divergence among the
three subclades in Clade A of O. cotio,
Rahman et al. (2018) stated that “The haplotype group represented by the
sequences from the Narmada, Karnafuli, Sangu, and Godavari drainages may represent a distinct
species but not necessarily undescribed. Based on the very brief description
(Silas 1952) and data on topotypes in Jadhav et al. (2011), the oldest
alternative available name may be O. peninsularis,
with type locality Pune (Maharashtra, India) in the upper Krishna River
drainage”. Based on the COI sequences, we consider that the three sequences
(KF550101 to KF550103) with no locality information but identified as O.
cotio in NCBI are in fact O. peninsularis.
Discussion
In this study, specimens were
identified as Osteobrama peninsularis based on morphological characteristics,
including 58 lateral line scales, the absence of barbels,
and an anal fin with 29 branched rays. This species, originally described from
Pune (Poona) in the upper Krishna River drainage of Maharashtra, has been
frequently reported in Maharashtra (Silas 1952; Tonapi
& Mulherkar 1963; Kharat
et al. 2000, 2003; Arunachalam et al. 2002; Wagh
& Ghate 2003; Chandanshive
et al. 2007; Heda 2009; Jadhav & Yadav 2009).
Biju et al. (1999) reported O.
peninsularis from the Periyar
River in Central Kerala, indicating a range extension into Kerala. They, along
with Talwar & Jhingran (1991) and Jayaram (1999),
recognized the species as distributed solely in peninsular India, including
Maharashtra, Odisha, Andhra Pradesh (erstwhile), and Kerala. The species has
also been documented in the Tungabhadra River, Karnataka (Shahnawaz & Venkateshwarlu 2009; Shahnawaz et al. 2010). Although
previous studies (Jayaram & Mazumdar 1976; Mohanty et al. 2015) noted its
occurrences in Odisha, Dutta et al. (1993) did not include it in the state
fauna series of Odisha.
Morphologically, O. peninsularis is superficially similar to O. belangeri, O. cotio,
O. cunma because of lack of barbels. However, it is distinguished from all the three
congeners in having pre-dorsal 21 to 24 scales and Lateral line scales 55 to
60. Furthermore, it is distinguished from O. belangeri
in having more branched anal-fin rays (28–31 vs. 17–18), less pre-dorsal scales
(21–24 vs. 31–34), less lateral line scales (55–60 vs. 70–78); from O. cotio in having less branched anal-fin rays (28–31
vs. 33–38), less lateral line scales (55–60 vs. 65); from O. cunma in having more branched anal-fin rays (28–31
vs. 25–29), less pre-dorsal scales (21–24 vs. 28–30) and more lateral line
scales (55–60 vs. 42–53). This study largely aligns with the original
description of O. peninsularis, noting
only minor variations in body morphometry (see Table 1). Parameters
of meristic counts, provide insights into the species’ morphological
consistency across different populations. The specimens examined were smaller
than the type specimens, and minor variations may relate to their distribution.
The findings indicate that the distribution of O. peninsularis
extends through the river basins of the Godavari and Krishna in Maharashtra,
Telangana, Andhra Pradesh, and into the Mahanadi basin in Odisha and the
Subarnarekha river basin in West Bengal. In a recent study, amendment of
description of O. vigorsii and the
expansion of distribution of O. tikarpadaensis
have also been reported (Laskar et al. 2024). With
the addition of O. peninsularis, the
state fauna of West Bengal now includes two species of Osteobrama.
A distribution map of O. peninsularis
is given in Figure 2.
The presence or absence of barbels is a crucial taxonomic feature in Osteobrama (Hora & Misra
1940; Shangningam et al. 2020). When present, the barbels may be either one pair of maxillary barbels or both maxillary and rostral, sometimes being
minute or rudimentary. The rostral barbels can be
hidden or barely visible, while in some species, they extend to the base of the
maxillary barbels. Osteobrama
species are categorized into three groups based on their barbels:
(i) with four well-defined barbels,
(ii) with two rudimentary maxillary barbels, and
(iii) without barbels (Hora & Misra
1940). Recently, O. vigorsii was
revised and placed in Group (i), alongside O. bakeri, O. feae,
O. neilli, and O. tikarpadaensis (Laskar et
al. 2024).
Table 1.
Morphometric Measurements of Osteobrama peninsularis from West Bengal (ZSI FF 9901). The table
presents various body dimensions, expressed in millimeters and as percentages
of standard length (SL) and head length (HL), providing a detailed overview of
the species’ morphological characteristics.
|
|
Parameters |
value |
|
1 |
Standard Length |
69.4 mm |
|
|
% SL |
|
|
2 |
Body Depth |
42.22 |
|
3 |
Head Length (Lateral) |
23.92 |
|
4 |
Head depth (Occiput) |
19.45 |
|
5 |
Snout Length |
6.20 |
|
6 |
Eye Diameter |
8.36 |
|
7 |
Inter orbital Width |
8.79 |
|
8 |
Max. Head width |
12.39 |
|
9 |
Gape Width |
5.48 |
|
10 |
Internerial space |
4.76 |
|
11 |
Body width at anal fin origin |
9.51 |
|
12 |
Body width at dorsal fin origin |
11.67 |
|
13 |
Caudal Peduncle Length |
9.37 |
|
14 |
Caudal Peduncle Depth |
12.54 |
|
15 |
Dorsal-fin base Length |
13.40 |
|
16 |
Dorsal-fin Length |
26.37 |
|
17 |
Pectoral-fin Length |
17.00 |
|
18 |
Pelvic-fin Length |
14.99 |
|
19 |
Anal-fin base Length |
37.03 |
|
20 |
Anal-fin Length |
40.35 |
|
21 |
Caudal fin length |
24.93 |
|
22 |
Median caudal fin Length |
11.53 |
|
23 |
Predorsal Length |
51.30 |
|
24 |
Prepectoral Length |
22.05 |
|
25 |
Prepelvic Length |
39.48 |
|
26 |
Preanal Length |
53.31 |
|
27 |
Pelvic anal distance |
15.85 |
|
|
% HL |
|
|
28 |
Snout Length |
25.90 |
|
29 |
Eye Diameter |
34.94 |
|
30 |
Inter Orbital Width |
36.75 |
|
31 |
Max. Head Width |
51.81 |
|
32 |
Gape Width |
22.89 |
|
33 |
Internerial space |
19.88 |
Table 2.
Meristic counts of Osteobrama peninsularis from different locations. This table
summarizes the meristic characteristics of O. peninsularis
specimens from West Bengal (ZSI FF 9901) and Wyra
Lake in Telangana (FBRC/ZSI/F3549), alongside counts from previous literature
(Silas 1952).
|
Parameters |
O. peninsularis from W.B.: ZSI FF 9901 |
O. peninsularis
from, Wyra Lake, Godavari Drainage, Telangana: FBRC/ZSI/F3549 |
O. peninsularis original descriptions by Silas (1952) |
|
Dorsal fin |
iii 8 |
iii 8 |
iii 9 |
|
Pectoral fin |
i 14 |
i 14 |
16 |
|
Pelvic fin |
i 8 |
i 9 |
i 9 |
|
Anal fin |
ii 29 |
ii 30 |
iii 28-31 |
|
Lateral line scales |
58 |
58 |
55-60 |
|
Predorsal scales |
24 |
24 |
21-24 |
|
Pre-anal scales |
21 |
- |
- |
for
figures & image – click her for PDF
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